PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_18466.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

YABBY

Protein Properties

Length: 225aa MW: 24034.4 Da PI: 9.7384

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_18466.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	150.2	1.9e-46	2	175	23	169
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshl..deslkee.....................lleelkveeenlksnvekeesastsv 96 v vP +slfk+v+vrCGhC++llsvnl++ aa+ +l +sl + +l +++ + + + + +++++a ++ MLOC_18466.2 2 QVGVPCSSLFKTVAVRCGHCANLLSVNLRNLLLPAAAN-QLpfTQSLLSPtspasphglldemssfqapssIL-TDQASPNVSSITSSSNSCAINTP 96 699***********************9877433332.2311222222256668999988888887766422.22233333333334444555555 PP YABBY 97 ssekl......senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 +++++ ++ e ++ + + + ekrqrvPsaynrfik+eiqrika nP+i hr+afsaaaknWahfP+ihfg MLOC_18466.2 97 AMSMMpppekpTQREPQQRKSAASGTKHSEKRQRVPSAYNRFIKDEIQRIKAINPEIPHRQAFSAAAKNWAHFPRIHFG 175 555568876543333333333455799*************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.0E-51	2	176	IPR006780	YABBY protein
SuperFamily	SSF47095	9.82E-7	118	169	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.4E-4	122	170	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MQVGVPCSSL FKTVAVRCGH CANLLSVNLR NLLLPAAANQ LPFTQSLLSP TSPASPHGLL 60 DEMSSFQAPS SILTDQASPN VSSITSSSNS CAINTPAMSM MPPPEKPTQR EPQQRKSAAS 120 GTKHSEKRQR VPSAYNRFIK DEIQRIKAIN PEIPHRQAFS AAAKNWAHFP RIHFGMMPDQ 180 GLMRKPSIQS QLDGAGDCML FNDSVYAAAA AAAATAASSM GATPF

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_18466.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376350	0.0	AK376350.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3121I03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167170.1	1e-136	protein YABBY 5-like
Swissprot	Q01JG2	1e-104	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	1e-104	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	M0V533	1e-164	M0V533_HORVV; Uncharacterized protein
STRING	MLOC_18466.1	1e-162	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.2	6e-36	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]