PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_18998.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HB-other
Protein Properties Length: 94aa    MW: 10481.1 Da    PI: 11.4231
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_18998.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.14.7e-061874153
                  TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
      Homeobox  1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53
                  +r Rt+ft+eq e++ e+ +    + ++p+        +++g++ r+ kvW +N + 
  MLOC_18998.1 18 KRFRTKFTPEQKERMLEFAHrvgwRVQKPDGGVVDAFCAQVGVPRRVLKVWMHNNKH 74
                  789*********98765444688789****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-31777IPR009057Homeodomain-like
SuperFamilySSF466891.49E-20976IPR009057Homeodomain-like
TIGRFAMsTIGR015655.8E-261773IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
QAQAAVGSAS APPAPSKKRF RTKFTPEQKE RMLEFAHRVG WRVQKPDGGV VDAFCAQVGV  60
PRRVLKVWMH NNKHLAKTSQ PLPPLHHDHP PPPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-2516741674ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_18998.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3580051e-154AK358005.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1066M24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186987.18e-37zinc-finger homeodomain protein 7-like
SwissprotQ8S3Q94e-33ZHD7_ORYSJ; Zinc-finger homeodomain protein 7
TrEMBLF2D2981e-58F2D298_HORVV; Predicted protein (Fragment)
STRINGMLOC_18998.11e-62(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134912329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.25e-26homeobox protein 31