PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_19031.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 229aa    MW: 25026.8 Da    PI: 7.0385
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_19031.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.8e-32169224358
                   -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                   Dgy+WrKYGqK +k++++prsYY+Ctsa+C++kk+ve+s++dp+++++tYeg+H h
  MLOC_19031.2 169 DGYRWRKYGQKFIKNNPHPRSYYKCTSARCSAKKHVEKSTDDPEMLIVTYEGSHLH 224
                   9*****************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-31164225IPR003657WRKY domain
SuperFamilySSF1182901.2E-26166226IPR003657WRKY domain
SMARTSM007742.9E-36167226IPR003657WRKY domain
PfamPF031067.4E-27169224IPR003657WRKY domain
PROSITE profilePS5081128.013169227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MANQSLHKCG LLVQEQEMGD ALRDHDLAAT ADDEDAGVWP GELDEQLIRE LLSDDSLLGS  60
MYPDNDSGRH RSCDTGGAPA ATPCNSGGST AAEHEPVPPA SASSMPLCSA YSGPTIRDIE  120
KALWSRPYTS SQRYGSLHFR RYGAPGTAPE SRHVTKVRSC GGGKKTPMDG YRWRKYGQKF  180
IKNNPHPRSY YKCTSARCSA KKHVEKSTDD PEMLIVTYEG SHLHGPQTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-221692241974Probable WRKY transcription factor 4
2lex_A9e-221692241974Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_19031.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3626860.0AK362686.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009G15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148290.11e-137WRKY transcription factor WRKY24-like isoform X1
TrEMBLF2DFL91e-155F2DFL9_HORVV; Predicted protein
STRINGMLOC_19031.21e-171(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131442633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.16e-25WRKY DNA-binding protein 49