PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_19134.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 220aa    MW: 23730.2 Da    PI: 11.3742
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_19134.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.85.7e-2545151199
                   EEEE-..-HHHHTT-EE--HHH.HTT...........---...--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkke.esktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                   f+kv tpsdv+k++rlv+pk+fae+h               +  +  l++ed +g  r W ++++y+ +s++yv+tkGW+ Fv++ +L +gD+v F 
  MLOC_19134.1  45 FDKVVTPSDVGKLNRLVVPKHFAERHilprllggaarA---AcPGAVLRFEDGRGggRAWAFRFSYWSSSQSYVMTKGWSAFVRDRRLAAGDTVSFC 138
                   89*****************************9875431...2234579999977788***************************************9 PP

                   E-SSSEE..EEEEE-S CS
            B3  84 ldgrsefelvvkvfrk 99 
                      r++++l++  +r+
  MLOC_19134.1 139 ---RTGARLFIDCRRR 151
                   ...5677788888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-3140151IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.05E-2442146IPR015300DNA-binding pseudobarrel domain
CDDcd100171.67E-2443142No hitNo description
PfamPF023629.1E-2245151IPR003340B3 DNA binding domain
PROSITE profilePS5086312.88745152IPR003340B3 DNA binding domain
SMARTSM010192.3E-1345152IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MALTAGGGES RGAEQDGGGG GVELSRSSGN GGNGEERRMR REHMFDKVVT PSDVGKLNRL  60
VVPKHFAERH ILPRLLGGAA RAACPGAVLR FEDGRGGGRA WAFRFSYWSS SQSYVMTKGW  120
SAFVRDRRLA AGDTVSFCRT GARLFIDCRR RGTGIGASAP PTRLLAPAVM PQVVTLMPQR  180
STSSGETAPH VRCFRLFGVD LELIGAEPLS LDLQLALMRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-37411514113B3 domain-containing transcription factor NGA1
5os9_B1e-37411514113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_19134.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179500.11e-124B3 domain-containing protein Os06g0107800-like
SwissprotQ5VS556e-53Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLM0V6921e-156M0V692_HORVV; Uncharacterized protein
STRINGMLOC_19134.11e-157(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.14e-33B3 family protein