PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_19175.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 225aa    MW: 24027.3 Da    PI: 6.2606
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_19175.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.81.2e-11128102129
           NAM 102 lkktLvfykgrapkgektdWvmheyrle 129
                   ++ktLvfy+grap+g+k+dW+mheyrle
  MLOC_19175.2   1 MRKTLVFYRGRAPHGQKSDWIMHEYRLE 28 
                   89************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023653.0E-4127IPR003441NAC domain
PROSITE profilePS5100522.099150IPR003441NAC domain
SuperFamilySSF1019411.57E-15150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MRKTLVFYRG RAPHGQKSDW IMHEYRLEEI DEAQGGTSED GWVVCRVFKK KCFFKIAGGG  60
EGSSSQSADA GAGHMAVSSP LGGHDHADRA AMASHYMHGM HPQYHPQHAS SFYYSQMQPP  120
EAAYSHHVQV QDLLTNHRPA ADAAGGGYDF SGLPVEHPGL DVGSSDGVAA DGLAEGRGQT  180
NGAADQQWQA MDGFSNGGSA AAVQQMSAMN SGQRGGEMDL WGYGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-14151116166NO APICAL MERISTEM PROTEIN
1ut4_B4e-14151116166NO APICAL MERISTEM PROTEIN
1ut7_A4e-14151116166NO APICAL MERISTEM PROTEIN
1ut7_B4e-14151116166NO APICAL MERISTEM PROTEIN
3swm_A4e-14151119169NAC domain-containing protein 19
3swm_B4e-14151119169NAC domain-containing protein 19
3swm_C4e-14151119169NAC domain-containing protein 19
3swm_D4e-14151119169NAC domain-containing protein 19
3swp_A4e-14151119169NAC domain-containing protein 19
3swp_B4e-14151119169NAC domain-containing protein 19
3swp_C4e-14151119169NAC domain-containing protein 19
3swp_D4e-14151119169NAC domain-containing protein 19
4dul_A4e-14151116166NAC domain-containing protein 19
4dul_B4e-14151116166NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_19175.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9715421e-56EU971542.1 Zea mays clone 366845 NAC domain-containing protein 76 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155185.11e-162protein BEARSKIN1
TrEMBLM0V6B81e-163M0V6B8_HORVV; Uncharacterized protein
STRINGMLOC_19175.11e-164(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.12e-23NAC domain containing protein 70