PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_1969.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 93aa    MW: 10271.3 Da    PI: 5.7469
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_1969.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.51.7e-061134456
                 HHHHHHHHHHHHH CS
     Homeobox 44 VkvWFqNrRakek 56
                 V vWFqNrRa++k
  MLOC_1969.1  1 VAVWFQNRRARWK 13
                 89**********9 PP
2HD-ZIP_I/II67.92.2e-221514393
  HD-ZIP_I/II 43 vavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
                 vavWFqnrRAR+ktkqlE+dy+aL+++ydal+ ++++L++++e+L +e+k+
  MLOC_1969.1  1 VAVWFQNRRARWKTKQLERDYNALRHSYDALRLDHDALRRDKEALLAEIKD 51
                 8*********************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.572115IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-7122IPR009057Homeodomain-like
SuperFamilySSF466892.93E-6127IPR009057Homeodomain-like
CDDcd000862.26E-4116No hitNo description
PfamPF021834.4E-181556IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
VAVWFQNRRA RWKTKQLERD YNALRHSYDA LRLDHDALRR DKEALLAEIK DLKGKLGDEE  60
AAASFTSVKE EPAASDGPPP AGMGSSDSDS SGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1715RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_1969.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3540631e-150AK354063.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1004L21.
GenBankAK3558871e-150AK355887.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1027I19.
GenBankAK3640891e-150AK364089.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2021J14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148015.14e-59homeobox-leucine zipper protein HOX4-like
SwissprotQ6K4983e-48HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
SwissprotQ9XH373e-48HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBLA0A287RPU12e-58A0A287RPU1_HORVV; Predicted protein
STRINGMLOC_1969.12e-61(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.12e-22homeobox protein 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]