PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_19822.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 169aa    MW: 17930.4 Da    PI: 9.9535
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_19822.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00025779123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C+ Cg+ F++   L  H  +H
  MLOC_19822.1 57 FVCKTCGRAFPTFQALGGHRTSH 79
                  89**********99998888877 PP
2zf-C2H211.10.0012107129123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C++Cg  F     L  H+r+H
  MLOC_19822.1 107 HECQICGIGFEMGQALGGHMRRH 129
                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.58E-957129No hitNo description
SMARTSM003550.25779IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-105781IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3675784IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM003550.45107129IPR015880Zinc finger, C2H2-like
PfamPF139124.9E-10107131IPR007087Zinc finger, C2H2
PROSITE profilePS501578.891107129IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MGAGIKRSRE EESSMSLALS LSTDSASSAG TSAGSGAGAP AKRRRGAVVA TSGDGEFVCK  60
TCGRAFPTFQ ALGGHRTSHL RGRHGLELGV GVARAIKERK RREEKQHECQ ICGIGFEMGQ  120
ALGGHMRRHR EVMAPRSADD RCVALLPDQE VAGHQAAGYQ PPVLLHLFI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197102ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_19822.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198432.13e-97zinc finger protein ZAT12-like
TrEMBLA0A3B6N0M36e-96A0A3B6N0M3_WHEAT; Uncharacterized protein
TrEMBLA0A453M9L96e-96A0A453M9L9_AEGTS; Uncharacterized protein
STRINGMLOC_19822.11e-118(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.11e-18C2H2 family protein