PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_20213.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 405aa    MW: 44009.1 Da    PI: 5.9006
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_20213.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54.1e-10353401146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                      r++WT+  ++ l+++v+ +G+g+Wk I    +   + R+  + k+++++
     MLOC_20213.2 353 RKKWTEMQEKTLIEGVENYGKGNWKEIKIAYPdvfQDRSTVDMKDKFRN 401
                      799*******************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.586348405IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-10349402IPR009057Homeodomain-like
SuperFamilySSF466893.59E-12350402IPR009057Homeodomain-like
SMARTSM007175.2E-5352405IPR001005SANT/Myb domain
PfamPF002491.7E-8353401IPR001005SANT/Myb domain
CDDcd116605.00E-17354402No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEMDWGRTQS PYPDPEQAQP NKKRGGEQDG GPDGGPSATM PPLTAADAFL VLEFVAGNRL  60
LPHSLFSGLL AALPSVSPRT STRLRKAVAL RALEAALSGS DADGSGELPR KARDVLDDPG  120
VAAFFPDHLA VVRDDVAALR RLVDAEWAGL PPSALELEAD RIAGAGALDT WANADQDTRK  180
ILRLLVGEST EREILGKLGE GPSKAPQVDE AANAPGTSGA NEDGRAQQDD EANLGRGKGE  240
GNHAQEDCAR HQQEPVERTT DARIPEKPVP SAAIKGKEQA TSSHVTGQAA PDHNKSHPVT  300
GFKPSLMERK PSAIVYEWDD SGDSDSERPP RKRQLPTYER KMRPPPGVPH KTRKKWTEMQ  360
EKTLIEGVEN YGKGNWKEIK IAYPDVFQDR STVDMKDKFR NMGRH
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_20213.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158353.10.0uncharacterized protein LOC109743674
TrEMBLA0A287H4840.0A0A287H484_HORVV; Uncharacterized protein
STRINGMLOC_20213.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139982224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.15e-10TRF-like 5