PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_20318.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 246aa    MW: 26300.3 Da    PI: 6.8675
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_20318.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21e-11180225655
                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +++Er RR ri +++ +L++l+P+     +k  + +++L  Av+YIk Lq
  MLOC_20318.1 180 SIAERERRTRISKRLRRLQDLVPNM----DKQTNTSDMLDIAVDYIKVLQ 225
                   689*********************7....688***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.922174224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15177235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.24E-13178229No hitNo description
Gene3DG3DSA:4.10.280.104.9E-15179236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11180230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-9180225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MADPHGNGGG MGGARGGGMG GGYAHSHSHS QGGAGGNADA MAAAQQRRLS SQWSFSRQQD  60
MMPHIAEMGM AMPTPTPMPP ADVGESIATG HGSGDLSRSF SMSSWDDTNS NIIFSAPPGG  120
KKAKVMADGD DGMVTSFSNI DSQFGSSLDM PGMDDYLQLQ QDSVACRVRA KRGCATHPRS  180
IAERERRTRI SKRLRRLQDL VPNMDKQTNT SDMLDIAVDY IKVLQDQIEK LKQDQGNCSC  240
SADQKC
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_20318.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3690830.0AK369083.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2085A02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198304.11e-141transcription factor bHLH128-like
TrEMBLF2DYW31e-180F2DYW3_HORVV; Predicted protein
TrEMBLM0V8J60.0M0V8J6_HORVV; Uncharacterized protein
STRINGMLOC_20318.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-38bHLH family protein