PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_20442.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Dof
Protein Properties Length: 138aa    MW: 14753.5 Da    PI: 7.4536
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_20442.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof60.82.6e-191352660
        zf-Dof 26 lsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                  ++qPr++C++CrryWt+GG+lr vPvGg++r++  
  MLOC_20442.1  1 MAQPRHYCRTCRRYWTHGGTLRKVPVGGACRRSSG 35
                  58*****************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-9130IPR003851Zinc finger, Dof-type
PROSITE profilePS5088417.439135IPR003851Zinc finger, Dof-type
PfamPF027018.3E-16234IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MAQPRHYCRT CRRYWTHGGT LRKVPVGGAC RRSSGNSNKR RRPSAEPHTP SSDSPQPDQL  60
DTLPPFPVFP FLTDGGPVFL PQFDLGLGGF PWTAPPATDH LYDGLAAPSG GCDGALTPAG  120
AWDDLGGLDF TWPPPAGN
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_20442.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3750240.0AK375024.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3083K20.
GenBankAK3751740.0AK375174.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3087B14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186822.12e-60dof zinc finger protein DOF1.7-like
TrEMBLA0A287JMX45e-96A0A287JMX4_HORVV; Uncharacterized protein
TrEMBLA0A287JN295e-96A0A287JN29_HORVV; Uncharacterized protein
STRINGMLOC_20442.16e-95(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.12e-12OBF binding protein 4