PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_21759.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 183aa    MW: 19104.6 Da    PI: 7.4189
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_21759.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.6e-11130162136
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS CS
           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapsk 36 
                   +r++h ++Er+RR+++N+ ++ Lr+l+P++   +++
  MLOC_21759.2 130 QRMTHIAVERNRRKQMNEYLAALRSLMPPS---YAQ 162
                   79**************************97...444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.27E-9122164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-9128161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-9128170No hitNo description
PROSITE profilePS5088810.829129183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-8130162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MALEAAVFSR AAAARLFGRC AMAGAGGAWN GLFGGGEGLA GLDGGDWDAD AVAAACSSML  60
LPHAAFQELD ISVPGAATTP PQEGTGVPGA ELNAAGVGED NATPMTAAAT GRRKRRRTRT  120
AKNSEEVESQ RMTHIAVERN RRKQMNEYLA ALRSLMPPSY AQRVTLTAAI GLLDPFAVVT  180
YWL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112116RKRRR
2112117RKRRRT
3130141RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_21759.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053999e-67AP005399.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0676H02.
GenBankAP0055749e-67AP005574.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1595_D08.
GenBankAP0149659e-67AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126179e-67CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148028.11e-68transcription factor bHLH94-like
TrEMBLA0A287RP141e-127A0A287RP14_HORVV; Uncharacterized protein
STRINGMLOC_21759.11e-82(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-20bHLH family protein