PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_22000.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GATA
Protein Properties Length: 200aa    MW: 23092 Da    PI: 8.9673
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_22000.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.39e-18114148135
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   C++C + +Tp+WR+gp g+ktLCnaCG++y++ +l
  MLOC_22000.1 114 CTHCLSHTTPQWRSGPLGPKTLCNACGVRYKSGRL 148
                   *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0016148IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.655136IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.8E-6235IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.47E-5245No hitNo description
SMARTSM004012.7E-16108162IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.714108144IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-14112172No hitNo description
CDDcd002022.03E-12113160No hitNo description
Gene3DG3DSA:3.30.50.101.2E-13113146IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440114139IPR000679Zinc finger, GATA-type
PfamPF003201.2E-15114148IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MRCSICLSDQ TSQQWQGSPS GALLCNKCSL RLKARNGFIK LERCGQQVDE EQDHGRGQDK  60
RKIKKTTYYG DDEEPPQEKK RIKKISFVDE QGKRRTKKTY VNEEVPLEEE VKRCTHCLSH  120
TTPQWRSGPL GPKTLCNACG VRYKSGRLLP EYRPANSPTF VSFMHSNSHK KVMQMRMSVE  180
NENENENEHS HSHSHSHSDM
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_22000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2562810.0AC256281.1 Hordeum vulgare clone HV_Mba475-H03, complete sequence.
GenBankAK2517110.0AK251711.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf124o21, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174280.11e-128GATA zinc finger domain-containing protein 10-like
TrEMBLA0A287Q8A91e-149A0A287Q8A9_HORVV; Uncharacterized protein
STRINGMLOC_22000.11e-149(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59623656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.19e-37GATA transcription factor 4