PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_22106.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 64aa    MW: 7110.13 Da    PI: 10.7782
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_22106.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.42.2e-114564322
                  -SS-EEEEEEE--TT-SS-E CS
          WRKY  3 DgynWrKYGqKevkgsefpr 22
                  D+y+WrKYGqK++kgs++pr
  MLOC_22106.1 45 DEYSWRKYGQKPIKGSPYPR 64
                  9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.2E-18241IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.2E-113164IPR003657WRKY domain
PROSITE profilePS5081112.7373864IPR003657WRKY domain
SuperFamilySSF1182901.24E-84164IPR003657WRKY domain
PfamPF031063.0E-74564IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
PCAGAHSEAN TTGSRCHCSK RRKNRVKTTV RVPAVSAKIA DIPPDEYSWR KYGQKPIKGS  60
PYPR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250|UniProtKB:Q0JEE2}.
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000269|PubMed:16623886}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_22106.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250|UniProtKB:Q0JEE2, ECO:0000269|PubMed:15618416}.
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (PubMed:15618416, PubMed:16623886). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (PubMed:16623886). Repressed by GA (PubMed:15618416). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:16623886}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3719581e-103AK371958.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143P19.
GenBankDQ8404061e-103DQ840406.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 7 (WRKY7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163114.12e-39probable WRKY transcription factor 17
SwissprotQ0JEE26e-26WRK51_ORYSJ; WRKY transcription factor WRKY51
SwissprotQ6IEN16e-26WRK51_ORYSI; WRKY transcription factor WRKY51
TrEMBLA0A287J7169e-39A0A287J716_HORVV; Uncharacterized protein
STRINGTraes_2AL_15A7BB684.11e-38(Triticum aestivum)
STRINGTraes_2BL_6B75B32E3.18e-39(Triticum aestivum)
STRINGTRIUR3_21369-P12e-39(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.21e-19WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y,Wang L
    The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants.
    BMC Evol. Biol., 2005. 5: p. 1
    [PMID:15629062]
  3. Wu KL,Guo ZJ,Wang HH,Li J
    The WRKY family of transcription factors in rice and Arabidopsis and their origins.
    DNA Res., 2005. 12(1): p. 9-26
    [PMID:16106749]
  4. Xie Z, et al.
    Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells.
    Plant J., 2006. 46(2): p. 231-42
    [PMID:16623886]
  5. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  6. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  7. Hwang SH, et al.
    OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae.
    Plant Cell Rep., 2016. 35(9): p. 1975-85
    [PMID:27300023]