PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_2269.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 100aa    MW: 10998.4 Da    PI: 9.8328
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_2269.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.7e-081458445
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     WT+   +l+ +a + +  +   +W+ +ar +g g+++ ++k ++ 
      MLOC_2269.1 14 WTPKQNKLFEQALAVHDRDtpdRWHNVARAVGGGKSADDVKRYYE 58
                     *****************99************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.993661IPR017877Myb-like domain
SMARTSM007176.1E-71063IPR001005SANT/Myb domain
SuperFamilySSF466895.3E-111368IPR009057Homeodomain-like
CDDcd001671.04E-51461No hitNo description
PfamPF002491.3E-51458IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MASLSMSAAG RAGWTPKQNK LFEQALAVHD RDTPDRWHNV ARAVGGGKSA DDVKRYYELL  60
VHDIARIEAG KVPFPAYRSP CPGSGHNAGY EADRLKHLKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-285100392RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_2269.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519254e-83JF951925.1 Aegilops speltoides clone TaMYB42 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154612.12e-67protein RADIALIS-like 3
RefseqXP_020154876.12e-67protein RADIALIS-like 3
SwissprotQ1A1734e-30RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A287GQI83e-68A0A287GQI8_HORVV; Uncharacterized protein
STRINGMLOC_2269.13e-69(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-32RAD-like 6