PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_22698.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

DBB

Protein Properties

Length: 240aa MW: 25146.8 Da PI: 4.9494

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_22698.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.7	4.8e-08	19	56	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Ht 38 r C+ + + ++lfC+ + +lC+ C H + H MLOC_22698.2 19 RACDSCATEAARLFCRADAAFLCAGCDARAHGSgsrHA 56 67**************************9994366675 PP
2	zf-B_box	25.8	2.3e-08	58	103	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ ++ C+ + lC++C +H H++vp+ MLOC_22698.2 58 VWLCEVCEHAPAAVTCKADAAVLCASCDADIHAAnplarrHERVPV 103 679*****************************66888889999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	2.4E-6	16	60	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.651	16	60	IPR000315	B-box-type zinc finger
CDD	cd00021	8.20E-7	19	60	No hit	No description
Pfam	PF00643	2.3E-6	19	55	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.509	56	103	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.2E-6	58	103	IPR000315	B-box-type zinc finger
CDD	cd00021	1.15E-7	59	103	No hit	No description
SMART	SM00336	1.4E-8	61	103	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MEGEEKPVVG GAYWGVGARA CDSCATEAAR LFCRADAAFL CAGCDARAHG SGSRHARVWL 60 CEVCEHAPAA VTCKADAAVL CASCDADIHA ANPLARRHER VPVAPFFGAA ADAHKPFPSS 120 GAQAGAAASA EDDGSNDAEA ASWLLPEPDH KDGANGATAD VFFADSDHYL DLDFARSMDD 180 IKAISVQLNG QPEIDLNGGN KGFYSDHSMN HSVRIILYIP VMHEQRGAAS VLTSDGHLAR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_22698.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF490474	0.0	AF490474.1 Hordeum vulgare subsp. vulgare cultivar Igri CONSTANS-like protein (CO4) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189579.1	1e-145	zinc finger protein CONSTANS-LIKE 4-like
Swissprot	Q9FHH8	8e-46	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	A0A453CBF9	1e-154	A0A453CBF9_AEGTS; Uncharacterized protein
STRING	MLOC_22698.1	1e-153	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	3e-45	CONSTANS-like 5

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]