PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_23224.1
Common NameMYB1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 191aa    MW: 20998 Da    PI: 9.154
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_23224.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.7e-105331847
                     HTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqky 47
                     +lG ++W++Ia +++ gRt++++k++w+++
     MLOC_23224.1  5 LLGARRWSLIAGRLP-GRTDNEIKNYWNTH 33
                     5899***********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.273138IPR017930Myb domain
PfamPF002493.3E-8533IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-8542IPR009057Homeodomain-like
CDDcd001674.26E-8534No hitNo description
Gene3DG3DSA:1.10.10.606.0E-14635IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
HVLFLLGARR WSLIAGRLPG RTDNEIKNYW NTHIRRKLTS RGIDPVTHRA INSDHAASNI  60
TISFESAQRD DKGAVFRRDA EPAKAAAAAA AISHHVDHHH RSNPQLDWGQ GKPLKCPDLN  120
LDLCISPPIH EDPMVDTKPV VKREAGVGVG VGVVGLCFSC SMGLPRSSDC KCSSFMGLRT  180
AMLDFRSIEM K
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_23224.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3619860.0AK361986.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001L03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194822.11e-107myb-related protein Hv1
SwissprotP200261e-113MYB1_HORVU; Myb-related protein Hv1
TrEMBLA0A287S1Z01e-112A0A287S1Z0_HORVV; Uncharacterized protein
STRINGMLOC_23224.11e-140(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.19e-27myb domain protein 4
Publications ? help Back to Top
  1. Marocco A, et al.
    Multiple genes are transcribed in Hordeum vulgare and Zea mays that carry the DNA binding domain of the myb oncoproteins.
    Mol. Gen. Genet., 1989. 216(2-3): p. 183-7
    [PMID:2664447]
  2. Wissenbach M, et al.
    Myb genes from Hordeum vulgare: tissue-specific expression of chimeric Myb promoter/Gus genes in transgenic tobacco.
    Plant J., 1993. 4(3): p. 411-22
    [PMID:8220488]