PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_23537.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

TCP

Protein Properties

Length: 197aa MW: 20876.5 Da PI: 7.296

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_23537.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	102.2	9.1e-32	45	135	10	89
TCP 10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg.............k 89 k h+kv+gR+ RvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tgt++ +a ++ ++++ssss + + MLOC_23537.1 45 KGHSKVNGRGQRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGTGTAPAAFVsssTPSTSSSSF-----SyphtllgkrpreeN 135 88******************************************************99999666222222222222.....122233333333330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	22.472	43	97	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.0E-26	47	134	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MTSHDIAAAP SPFHVYQQHL PMTVAPSPDV GLAPAPSKEA GGSVKGHSKV NGRGQRVRMP 60 IVCAARVFQL TRELGLKSDG QTIEWLLRQA EPSILAATGT GTAPAAFVSS STPSTSSSSF 120 SYPHTLLGKR PREENDAVGA AAAASAFWAA LPWQDDWGFS PLEAQATYMP MAQVHQHHLD 180 LVAAVSGAAR RAEEEIR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_23537.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK061568	5e-84	AK061568.1 Oryza sativa Japonica Group cDNA clone:006-311-F05, full insert sequence.
GenBank	AP004067	5e-84	AP004067.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1581_H09.
GenBank	AP014958	5e-84	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020146556.1	3e-99	transcription factor TCP7-like
Swissprot	Q9FMX2	2e-34	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A287UBY7	1e-141	A0A287UBY7_HORVV; Uncharacterized protein
STRING	MLOC_23537.1	1e-142	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	6e-26	TCP family protein