PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_2366.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 210aa    MW: 22720.7 Da    PI: 10.2053
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_2366.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.4e-133177354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 r+h+e+Er+RR+riN  +++Lr+llP+a       ++Ka+ L ++v+++++L
  MLOC_2366.1 31 RSHSEAERKRRRRINAHLATLRSLLPSA-----SQMDKAALLGEVVRHVREL 77
                 78*************************9.....68**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.7642877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-103177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.01E-103178No hitNo description
Gene3DG3DSA:4.10.280.101.4E-133179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-123179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-113483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.7E-4118161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MMLRTRGGEP EQEAEMDNQR SPLARGARTS RSHSEAERKR RRRINAHLAT LRSLLPSASQ  60
MDKAALLGEV VRHVRELRGD ADGGAVAGVA VPGESDEVGV EEERWDARES AKRVRAWVCC  120
ADRPGLMSEL GRAVRSVSAR AVRAEIATVG GRTRSVLELE AGYGQAAGAS RPALHAALRA  180
VLLTREDQLL AVESYKRQCF SALISQGLGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13741RKRRR
23843KRRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_2366.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279686e-99KJ727968.1 Zea mays clone pUT6081 bHLH transcription factor (bHLH169) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170738.11e-132transcription factor AIG1-like
TrEMBLM0VDI31e-144M0VDI3_HORVV; Uncharacterized protein
STRINGMLOC_2366.11e-145(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.15e-25bHLH family protein