PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_24269.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

TCP

Protein Properties

Length: 147aa MW: 15225.1 Da PI: 7.0306

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_24269.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	83.9	3.9e-26	1	73	24	96
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 +++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tg+++++as+++++ ss +++ ++ aa+ +++ MLOC_24269.1 1 MPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTTPASFSTSSPSSLRPHAHAQPLAASPHHP 73 9*****************************************9999988844434443333333333333322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	20.861	1	39	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.8E-20	1	64	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MPIICAARVF QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GSGTTPASFS TSSPSSLRPH 60 AHAQPLAASP HHPHHHLPHA APFILGKRVR DDDDNGSGNG APSGEATVAA ASMGPAPGFW 120 ALPARGDFGQ MWSFAPPPEM MGAAPGG

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_24269.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374835	0.0	AK374835.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3077J21.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185649.1	2e-69	transcription factor TCP21-like
Swissprot	Q9FMX2	7e-49	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A287V930	2e-98	A0A287V930_HORVV; Uncharacterized protein
TrEMBL	A0A287V967	1e-98	A0A287V967_HORVV; Uncharacterized protein
STRING	MLOC_24269.1	1e-101	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	4e-32	TCP family protein