PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_24499.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 93aa    MW: 10383.7 Da    PI: 7.275
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_24499.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-053658123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  + C++Cg  F +   L  H+r+H
  MLOC_24499.1 36 HDCHICGLGFETGQALGGHMRRH 58
                  56********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.0E-53462No hitNo description
PROSITE profilePS501579.7023663IPR007087Zinc finger, C2H2
PfamPF139122.6E-103661IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
GGHRTSHLRG RHGLELGVGV ARAIKERKRQ EDMEQHDCHI CGLGFETGQA LGGHMRRHRE  60
EMALDRWVAL SDQEAGHQAA AADRLPVLLE LFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_24499.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3589901e-156AK358990.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1087A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198421.11e-52zinc finger protein ZAT8-like
TrEMBLA0A287SRX22e-61A0A287SRX2_HORVV; Uncharacterized protein
STRINGMLOC_24499.15e-60(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.17e-12C2H2 family protein