PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_24530.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 241aa    MW: 24661.6 Da    PI: 9.5982
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_24530.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.1e-193383256
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                  +y+GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAa+a++ a+++++g+
  MLOC_24530.1 33 HYRGVRKRP-WGRFAAEIRDPA---KKSRVWLGTYDTAEEAARAYDTAAREFRGA 83
                  6********.**********83...36*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-133382IPR001471AP2/ERF domain
SMARTSM003803.2E-393396IPR001471AP2/ERF domain
CDDcd000181.28E-273388No hitNo description
Gene3DG3DSA:3.30.730.105.6E-323390IPR001471AP2/ERF domain
PROSITE profilePS5103224.3683390IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-223391IPR016177DNA-binding domain
PRINTSPR003673.9E-113445IPR001471AP2/ERF domain
PRINTSPR003673.9E-115672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016604Cellular Componentnuclear body
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MAPRAAEKAP VSPPTGLGLG VGGGVGVVAG GAHYRGVRKR PWGRFAAEIR DPAKKSRVWL  60
GTYDTAEEAA RAYDTAAREF RGAKAKTNFP FPSSSSPSPL AAGGGSPSSN STLDSSGGGS  120
GGCAQAPMQA IPLPPALDLD LFHRAAAVTA GGMRFPFNGY PVAPRQPLHP YFFYEQAAAA  180
AAASSGYRTL KMAQPVTVAA VAQSDSDSSS VVDLSPSPPA VTAHKAVAFD LDLNRPPPSE  240
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-232995168ATERF1
3gcc_A3e-232995168ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00358DAPTransfer from AT3G15210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_24530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3562110.0AK356211.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1031H22.
GenBankAK3562210.0AK356221.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1031L09.
GenBankAK3621240.0AK362124.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2002J20.
GenBankAK3681080.0AK368108.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2068E22.
GenBankHQ6473530.0HQ647353.1 Hordeum vulgare subsp. vulgare cultivar Morex AP2/EREBP-like protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564396.11e-111ethylene-responsive transcription factor 8
TrEMBLF2CX581e-170F2CX58_HORVV; AP2/EREBP-like protein
STRINGMLOC_24530.11e-170(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.18e-16erf domain protein 9