PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_25460.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 218aa    MW: 23218 Da    PI: 5.8546
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_25460.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.23e-30691186
      trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                  rW+k+ev aLi++r+ +++r+++  lk+p Weevs +m++ g+  rs+k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+l+
  MLOC_25460.1  6 RWPKHEVEALIRVRSGLDNRFQEPGLKGPMWEEVSVRMAAAGYgGRSAKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFDELD 91
                  8******************************************99*************************98.99999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.433164IPR017877Myb-like domain
SMARTSM007170.0087366IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-4563IPR009057Homeodomain-like
CDDcd122032.10E-26571No hitNo description
PfamPF138372.1E-22593No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSSSSRWPKH EVEALIRVRS GLDNRFQEPG LKGPMWEEVS VRMAAAGYGG RSAKRCKEKW  60
ENINKYFRKA KESGKKRPAH AKTCPYFDEL DRLYSRSSGA GAAASSSAAG NANANTSTKA  120
NANANAMTTS ADDAANNSNK ASSELLDAVV KYPTDAHYGA PPGFLSDGAN ADVKDDGAAH  180
RDGDGDVDMG RTSGRAGDEH EDEAAQSHGH DGDDDDDH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_25460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3578660.0AK357866.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1063K18.
GenBankAK3690250.0AK369025.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083O21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151906.11e-100trihelix transcription factor GTL1-like
SwissprotQ391172e-38TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A287E1U91e-156A0A287E1U9_HORVV; Uncharacterized protein
STRINGMLOC_25460.11e-158(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-38Trihelix family protein