PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_25537.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 136aa    MW: 15380.2 Da    PI: 5.9151
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_25537.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.91.2e-1078135153
                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..E CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyr 53 
                   f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr
  MLOC_25537.1  78 FCKTLTASDTSTHGGFSVPRRAAEDCfphldyN-QQRPSQELVAKDLHGTEWKFRHIYR 135
                   99****************************963.3445679***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575124No hitNo description
Gene3DG3DSA:2.40.330.104.8E-2272135IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-2973136IPR015300DNA-binding pseudobarrel domain
CDDcd100175.29E-1176136No hitNo description
PfamPF023629.2E-978135IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MVSPFTRDHA AGLTPLFVGW FCACSQADAT TDEVYAQLSL LPENEELVRR MREATDDVSG  60
GEDGETVKQR FARMPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPHLDYN QQRPSQELVA  120
KDLHGTEWKF RHIYRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A9e-302613683182Auxin response factor 1
4ldw_A9e-302613683182Auxin response factor 1
4ldw_B9e-302613683182Auxin response factor 1
4ldx_A9e-302613683182Auxin response factor 1
4ldx_B9e-302613683182Auxin response factor 1
4ldy_A8e-302613683182Auxin response factor 1
4ldy_B8e-302613683182Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_25537.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3620900.0AK362090.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2002F15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158279.12e-66auxin response factor 15-like
SwissprotQ0JKI98e-51ARFB_ORYSJ; Auxin response factor 2
TrEMBLA0A446KBV61e-75A0A446KBV6_TRITD; Auxin response factor
STRINGMLOC_25537.24e-76(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.19e-52ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]