PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_25537.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Protein Properties

Length: 237aa MW: 25519.2 Da PI: 5.4498

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_25537.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.3	3.6e-10	179	236	1	53
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyr 53 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr MLOC_25537.2 179 FCKTLTASDTSTHGGFSVPRRAAEDCfphldyN-QQRPSQELVAKDLHGTEWKFRHIYR 236 99**************************963.3445679*************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.6E-21	173	236	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.1E-28	174	237	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.24E-10	177	237	No hit	No description
Pfam	PF02362	2.8E-8	179	236	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MAGIDLNTVE EDEEESSAEP LLAGTGCGGD CSSQSHSHSH SQTQSGYNGQ ASSPVATPPS 60 RPSAVCLELW HACAGPVAPM PRKGSVVVYL PQGHLDHLGD APAHAAASPA AAVPPHVFCR 120 VVDVTLHADA TTDEVYAQLS LLPENEELVR RMREATDDVS GGEDGETVKQ RFARMPHMFC 180 KTLTASDTST HGGFSVPRRA AEDCFPHLDY NQQRPSQELV AKDLHGTEWK FRHIYRG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldv_A	6e-50	64	237	18	182	Auxin response factor 1
4ldw_A	6e-50	64	237	18	182	Auxin response factor 1
4ldw_B	6e-50	64	237	18	182	Auxin response factor 1
4ldx_A	6e-50	64	237	18	182	Auxin response factor 1
4ldx_B	6e-50	64	237	18	182	Auxin response factor 1
4ldy_A	6e-50	64	237	18	182	Auxin response factor 1
4ldy_B	6e-50	64	237	18	182	Auxin response factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_25537.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin under dark condition. {ECO:0000269\|PubMed:17408882}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK362090	0.0	AK362090.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2002F15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158279.1	1e-107	auxin response factor 15-like
Swissprot	Q0JKI9	1e-90	ARFB_ORYSJ; Auxin response factor 2
TrEMBL	A0A287GLT9	1e-170	A0A287GLT9_HORVV; Auxin response factor
STRING	MLOC_25537.2	1e-176	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2537	35	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-73	ARF family protein

Publications ? help Back to Top
Khanday I,Yadav SR,Vijayraghavan U Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways. Plant Physiol., 2013. 161(4): p. 1970-83 [PMID:23449645]