PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_25708.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 254aa    MW: 29271.5 Da    PI: 10.6108
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_25708.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.31.8e-50111431128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                   lppGfrFhP+d+elv +yL +k+ g          +     ++ +vd++k+ePwdLp+ +  + kewyf+s rdkkyatg+r+nrat+sgyWkatgk
  MLOC_25708.2  11 LPPGFRFHPRDDELVLDYLSRKLGGGAgpavA---SiygcpAMVDVDLNKTEPWDLPEIACIGGKEWYFYSLRDKKYATGQRTNRATESGYWKATGK 104
                   79***********************9965541...14555479**************7666789********************************* PP

           NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                   d+ + + kg lvg++ktLvfy+grapkg+kt+Wvmhe+r 
  MLOC_25708.2 105 DRLISR-KGLLVGMRKTLVFYEGRAPKGKKTEWVMHEFRK 143
                   ****99.999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-532148IPR003441NAC domain
PROSITE profilePS5100549.03411165IPR003441NAC domain
PfamPF023651.6E-2512142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSSLSMVEAR LPPGFRFHPR DDELVLDYLS RKLGGGAGPA VASIYGCPAM VDVDLNKTEP  60
WDLPEIACIG GKEWYFYSLR DKKYATGQRT NRATESGYWK ATGKDRLISR KGLLVGMRKT  120
LVFYEGRAPK GKKTEWVMHE FRKEGQGDHM KLPLKVIVII IIHVNQKFIL LVDTPLLSPY  180
SIMHHMNRKC KKFHPKKIVR KLQNYILVAL FFKGGEGTSK MKLGRFGFTC GRFYEKYGLK  240
KQKTFGSRDI RMWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-4751429139Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_25708.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3653980.0AK365398.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2033O22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563412.11e-100NAC domain-containing protein 21/22
SwissprotQ84TE62e-67NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A287XPM21e-151A0A287XPM2_HORVV; Uncharacterized protein
STRINGMLOC_25708.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.12e-70NAC family protein
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]