PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_26177.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 233aa    MW: 24156.7 Da    PI: 7.6771
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_26177.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.88.1e-212166147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEdell dav+++G ++W+ I+++++ gRt+k+c++rw + 
     MLOC_26177.1 21 KGSWSPEEDELLRDAVARHGARNWTVISAEIP-GRTGKSCRLRWCNQ 66
                     799*****************************.***********985 PP
2Myb_DNA-binding51.81.9e-1673117147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++T++Ed  + + + ++G++ W+tIar+++ gRt++++k++w++ 
     MLOC_26177.1  73 RRAFTPDEDRVIFEEHSKHGNK-WATIARKLQ-GRTDNSVKNHWNST 117
                      678*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.6071671IPR017930Myb domain
SuperFamilySSF466891.05E-3018114IPR009057Homeodomain-like
SMARTSM007171.9E-172069IPR001005SANT/Myb domain
PfamPF002494.4E-202166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-242274IPR009057Homeodomain-like
CDDcd001674.08E-172365No hitNo description
PROSITE profilePS5129420.9472122IPR017930Myb domain
SMARTSM007179.3E-1472120IPR001005SANT/Myb domain
PfamPF002496.9E-1473117IPR001005SANT/Myb domain
CDDcd001671.42E-1175118No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2175121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MPDGGGGGGG GDGSDGAGRI KGSWSPEEDE LLRDAVARHG ARNWTVISAE IPGRTGKSCR  60
LRWCNQLSPG VHRRAFTPDE DRVIFEEHSK HGNKWATIAR KLQGRTDNSV KNHWNSTLRK  120
RRRAAAAAAA AAAGNGPVFA PVAAMSFQSV DLTKGGEDDY EDSDGSVEPP AKRQHPDVGG  180
AVPPAVKNLD DQAPPPPDPP TSLSLSLPGT GASAVTPPAP PAPATAPTTT MGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-34201216107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118122RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_26177.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184105.11e-87transcription factor MYB44-like
SwissprotO231601e-49MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A287FUD11e-165A0A287FUD1_HORVV; Uncharacterized protein
STRINGMLOC_26177.11e-167(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.11e-47myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]