PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_28634.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 261aa    MW: 28985.3 Da    PI: 4.8761
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_28634.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.46.4e-20128248390
          FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................................tekerrtraetrtgCkak 65 
                   Yn+Y+ ++GFs+++++s+k ++++e +k++fvC+k  k++ ++                                    t+k+r++ +  +tg kak
  MLOC_28634.1 128 YNSYSLQIGFSIKMNTSRKATKTRELIKQQFVCNKFRKPKVDDGGeekipmldeivdetkdddqdedivfldddsktkkTTKKRKRDTILQTGFKAK 224
                   ***********************************999999887789*****************************99989999999999******* PP

          FAR1  66 lkvkkekdgkwevtkleleHnHela 90 
                   ++vk+  dg+wev++++ eHnH+l+
  MLOC_28634.1 225 MVVKLI-DGRWEVIHFVGEHNHPLV 248
                   ******.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-18128248IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MIDLNEQPDE NNGDPVYCTQ HVAGNTEFVV ESPNPPMIQK VSVAAAEGIF TDGHSSLMMA  60
APGNTQIPEA VASESDGHTL DGTGAPSNTG GTVANGFGDE NDDEAWSQPK EPRVGMRFDT  120
LEGAKNNYNS YSLQIGFSIK MNTSRKATKT RELIKQQFVC NKFRKPKVDD GGEEKIPMLD  180
EIVDETKDDD QDEDIVFLDD DSKTKKTTKK RKRDTILQTG FKAKMVVKLI DGRWEVIHFV  240
GEHNHPLVDK PSLTKYLRSH Q
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_28634.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194049.12e-66protein FAR1-RELATED SEQUENCE 5-like
TrEMBLM0VHI30.0M0VHI3_HORVV; Uncharacterized protein
STRINGMLOC_28634.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP9528843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-10FAR1-related sequence 5