PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_28796.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 261aa    MW: 29886.7 Da    PI: 8.4066
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_28796.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.26.8e-14168250286
                   EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldg 86 
                   +k+++ sd   ++ + lp +f     +kk++++ l+ +d +++sWevk ++ k++++      +++GW +F+++ngLk gD ++Fk+++
  MLOC_28796.1 168 LKKEIGSDGVLKA-FHLPDHFG----YKKNCKILLRPMD-RNESWEVKGSVIKRPNTvytmNRFRGGWAKFCEENGLKKGDLCTFKVVN 250
                   5666666666666.78888886....5566754555444.779*******988888864334456*********************764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508637.613159IPR003340B3 DNA binding domain
PfamPF023625.3E-11182250IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-11184258IPR015300DNA-binding pseudobarrel domain
CDDcd100174.40E-10185247No hitNo description
Gene3DG3DSA:2.40.330.107.1E-13186259IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.221194261IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MATFLSHWHI GLERDGPDVF FAGSVWADFL DMLDLSETDV LLIKYQGCMN FSIEKFGHGD  60
DEHIEEEPGC SEESKQSPGA QSQEEEHVST RKRKQSNCKA PGAQGQEGKH VSTRTRKRKE  120
SNCKTPRAQG QEGERSKGER MLERHTTSRH VNMSCFFEIG KTGSQDWLKK EIGSDGVLKA  180
FHLPDHFGYK KNCKILLRPM DRNESWEVKG SVIKRPNTVY TMNRFRGGWA KFCEENGLKK  240
GDLCTFKVVN GKLWEVNIER R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18994TRKRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_28796.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181881.15e-83putative B3 domain-containing protein Os04g0346900 isoform X4
TrEMBLM0VHL20.0M0VHL2_HORVV; Uncharacterized protein
STRINGMLOC_28796.50.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-07B3 family protein