PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_28975.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 195aa    MW: 21683.4 Da    PI: 9.6558
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_28975.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.57.5e-1816103186
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                   +Wt+  +  L++a++++ e l+rg+l++ +We+v++++     ++   +s +qCk+k++nl+kryk + ++  +  s s s +p+++q+e
  MLOC_28975.4  16 EWTDGAISSLLDAYTDRFELLNRGNLRGRDWEDVAAAVtdghGKGSGGKSVEQCKNKIDNLKKRYKVECQRIAG--SASASLWPWYKQME 103
                   5*************************************88854555589*****************88888877..467779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-2014105No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
GRGGGVSSDY RKDREEWTDG AISSLLDAYT DRFELLNRGN LRGRDWEDVA AAVTDGHGKG  60
SGGKSVEQCK NKIDNLKKRY KVECQRIAGS ASASLWPWYK QMEQIMGNSP SPGTLKPPPA  120
TNDEKPRQQQ QNSNKRWLLF TSLLSLIWGS NGGESGDELM LIHAGALLPA LSTLLPWFLF  180
PDRLLSRIRN GKGYF
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_28975.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699350.0AK369935.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2101G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159183.15e-83uncharacterized protein LOC109744472
TrEMBLA0A1D5UTB16e-98A0A1D5UTB1_WHEAT; Uncharacterized protein
TrEMBLA0A453BXA16e-98A0A453BXA1_AEGTS; Uncharacterized protein
STRINGMLOC_28975.22e-94(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.22e-40Trihelix family protein