PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_28975.5

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Trihelix

Protein Properties

Length: 148aa MW: 16311 Da PI: 9.9233

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_28975.5	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.5	3.6e-18	24	111	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt+ + L++a++++ e l+rg+l++ +We+v++++ ++ +s +qCk+k++nl+kryk + ++ + s s s +p+++q+e MLOC_28975.5 24 EWTDGAISSLLDAYTDRFELLNRGNLRGRDWEDVAAAVtdghGKGSGGKSVEQCKNKIDNLKKRYKVECQRIAG--SASASLWPWYKQME 111 5***********************************88854555589*************88888877..467779*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.0E-21	22	113	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
PRPSASSKGR GGGVSSDYRK DREEWTDGAI SSLLDAYTDR FELLNRGNLR GRDWEDVAAA 60 VTDGHGKGSG GKSVEQCKNK IDNLKKRYKV ECQRIAGSAS ASLWPWYKQM EQIMGNSPSP 120 GTLKPPPATN DEKPRQQQQN SNKRCPSS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_28975.5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK369935	0.0	AK369935.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2101G10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020159183.1	2e-84	uncharacterized protein LOC109744472
TrEMBL	A0A287IER3	5e-99	A0A287IER3_HORVV; Uncharacterized protein
STRING	MLOC_28975.2	2e-80	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.2	1e-42	Trihelix family protein