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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | MLOC_29687.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 100aa MW: 11515.1 Da PI: 7.144 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 43.7 | 9.2e-14 | 24 | 70 | 43 | 90 |
FAR1 43 eekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
+++kkt+k+r++ + +tgCkak++vk+ dg+wev++++ eHnH+l+
MLOC_29687.1 24 SKTKKTTKKRKRDTILQTGCKAKMVVKLI-DGRWEVIHFVGEHNHPLV 70
34455789999999***************.****************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 1.1E-11 | 24 | 70 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 100 aa Download sequence Send to blast |
LDEIVDETKD DDQDEDIVFL DDDSKTKKTT KKRKRDTILQ TGCKAKMVVK LIDGRWEVIH 60 FVGEHNHPLV DKPSLTKYCD HTKGSQQKKG HSLHIFITAI |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | MLOC_29687.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020188487.1 | 7e-21 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | A0A287XGM8 | 7e-65 | A0A287XGM8_HORVV; Uncharacterized protein | ||||
| STRING | MLOC_29687.1 | 4e-66 | (Hordeum vulgare) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP9528 | 8 | 43 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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