PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_3052.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 95aa    MW: 10804.5 Da    PI: 6.7791
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_3052.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.23.9e-105742298
                 H.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3 22 faeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 f +++  +   +++ +l++ +  sW++++  +   gr++l +GW  F+  ++++ g +v+Fkl      +l+v +f+
  MLOC_3052.1  5 FNKHFAVV---PTEFKLKNNTDCSWRMTV--KLMTGRVTLDQGWATFAIVHHINIGYMVTFKLLT--PDTLKVIIFD 74
                 54333434...4579**************..999999*************************865..4446777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.969176IPR003340B3 DNA binding domain
PfamPF023621.3E-7274IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-12676IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-11676IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MPLDFNKHFA VVPTEFKLKN NTDCSWRMTV KLMTGRVTLD QGWATFAIVH HINIGYMVTF  60
KLLTPDTLKV IIFDDDGIEV VNKCGERGEA FAARD
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_3052.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-95HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146207.11e-52putative B3 domain-containing protein Os03g0621600
TrEMBLA0A287J4581e-54A0A287J458_HORVV; Uncharacterized protein
STRINGMLOC_3052.12e-65(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1723937