PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_3107.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GATA
Protein Properties Length: 247aa    MW: 26059.3 Da    PI: 8.9754
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_3107.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.85.4e-17158195136
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                  C++Cg ++  Tp++Rrgpdg++tLCnaCGl ++ kg++
  MLOC_3107.2 158 CQHCGISSnnTPMMRRGPDGPRTLCNACGLAWANKGMM 195
                  *****99889*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009795.9E-82863IPR010399Tify domain
PROSITE profilePS5132013.1362863IPR010399Tify domain
PfamPF062001.4E-103062IPR010399Tify domain
PfamPF062032.3E-1788130IPR010402CCT domain
PROSITE profilePS5101713.40488130IPR010402CCT domain
SMARTSM004012.0E-12152205IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-11155199No hitNo description
Gene3DG3DSA:3.30.50.103.2E-15157198IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.75E-14157196No hitNo description
PfamPF003202.9E-14158193IPR000679Zinc finger, GATA-type
PROSITE patternPS003440158185IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDEEAAAAAA HAHHGAAGPL GMEAGGAPQA PSNTLTLSFQ GEVFVFESVS AEKVQAVLLL  60
LGGRELGPGM GAGPSSSASY SKRLNSHRMA SLMRFREKRK ERNFDKKIRY SVRKEVAHRM  120
HRHKGQFTSS KAKAEEAASV ANSDWGAVEG RPPSAPVCQH CGISSNNTPM MRRGPDGPRT  180
LCNACGLAWA NKGMMREVKG HTPLKVVPPA TDDAQNGVAE APTAEQQHLA LEAAPEAPAP  240
AANGHDS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_3107.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3588960.0AK358896.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1085G16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166796.11e-132GATA transcription factor 17-like isoform X1
SwissprotQ6Z4331e-104GAT17_ORYSJ; GATA transcription factor 17
TrEMBLA0A287TK541e-180A0A287TK54_HORVV; Uncharacterized protein
STRINGMLOC_3107.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-53ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]