PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_31860.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 204aa    MW: 22295.3 Da    PI: 8.0717
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_31860.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45.1e-084267326
                  S---SGGGGTS...--TTTTT-SS-SS CS
       zf-CCCH  3 telCrffartG...tCkyGdrCkFaHg 26
                   e+C++++r      C++G++C+FaHg
  MLOC_31860.1 42 GEPCPDYRR-RpgaACPRGASCPFAHG 67
                  589****99.558*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0113968IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1263969IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-64271IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-64367IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-474105IPR000571Zinc finger, CCCH-type
SMARTSM003561577100IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MMYEFKVRRG ARGRSHDWTA CPYAHPGEAA RRRDPHRVAY AGEPCPDYRR RPGAACPRGA  60
SCPFAHGTFE LWLHPSRYRT RPCRAGLACR RRVCFFAHAA GELRAAHKGG PDSPLALSPK  120
STLTALWESP PVSPVEGRMR WLDLDAIDDA AAADAEVEEI MLAMQQLSFA KAAAPSASSG  180
TTQALPPVTE DDGPDLGWVT ELVM
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_31860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3629040.0AK362904.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2011B02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568066.11e-107zinc finger CCCH domain-containing protein 37
SwissprotQ65X921e-106C3H37_ORYSJ; Zinc finger CCCH domain-containing protein 37
TrEMBLF2DG871e-142F2DG87_HORVV; Predicted protein
STRINGMLOC_31860.11e-146(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112091926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.12e-44C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]