PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_31894.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 250aa    MW: 27725.2 Da    PI: 6.3099
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_31894.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.43.9e-30100157159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   +dDgynWrKYGqK vkg e+prsYY+Ct+a+Cpvkk+ve+sa  +++++i+Y+g+Hnh+
  MLOC_31894.1 100 VDDGYNWRKYGQKAVKGGEYPRSYYKCTQASCPVKKRVEHSA-YGQITQIIYRGQHNHQ 157
                   59****************************************.9**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-2792159IPR003657WRKY domain
PROSITE profilePS5081122.92895159IPR003657WRKY domain
SuperFamilySSF1182902.22E-2498159IPR003657WRKY domain
SMARTSM007743.7E-30100158IPR003657WRKY domain
PfamPF031063.2E-23101157IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MLIHLFLQGN FEMSHQQALA QVTAQAFHSQ YTVDSQADYS LPFSSEATSA LTSQFINSSA  60
NVTSMKETAT PPLRTVHDYL KTYEVSQGFQ TSALTVDKPV DDGYNWRKYG QKAVKGGEYP  120
RSYYKCTQAS CPVKKRVEHS AYGQITQIIY RGQHNHQRPP KRRSKDGGNL LNEDDFPENR  180
DALTRSERGS QDHSGKVEVS NDGIAGPSMS KRRDGGDQSS GSSDREEEDN DEAGDDNGDA  240
GIVNANKRCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-181001601475WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162RPPKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_31894.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2500890.0AK250089.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf63p16, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193919.11e-157probable WRKY transcription factor 4
RefseqXP_020193920.11e-157probable WRKY transcription factor 4
TrEMBLA0A287NYD60.0A0A287NYD6_HORVV; Uncharacterized protein
TrEMBLA0A287NYI20.0A0A287NYI2_HORVV; Uncharacterized protein
STRINGMLOC_31894.21e-174(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.25e-44WRKY DNA-binding protein 4