PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_31894.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 372aa    MW: 40960.8 Da    PI: 7.9543
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_31894.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.4e-3088145159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   +dDgynWrKYGqK vkg e+prsYY+Ct+a+Cpvkk+ve+sa  +++++i+Y+g+Hnh+
  MLOC_31894.2  88 VDDGYNWRKYGQKAVKGGEYPRSYYKCTQASCPVKKRVEHSA-YGQITQIIYRGQHNHQ 145
                   59****************************************.9**************8 PP
2WRKY1023.5e-32256314159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++er+++dp+ v++tYeg+H h+
  MLOC_31894.2 256 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERCSQDPTSVITTYEGKHSHD 314
                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-2780147IPR003657WRKY domain
PROSITE profilePS5081122.92883147IPR003657WRKY domain
SuperFamilySSF1182904.32E-2486147IPR003657WRKY domain
SMARTSM007743.7E-3088146IPR003657WRKY domain
PfamPF031066.1E-2389145IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-36243316IPR003657WRKY domain
SuperFamilySSF1182902.75E-29248316IPR003657WRKY domain
PROSITE profilePS5081136.104251316IPR003657WRKY domain
SMARTSM007742.0E-37256315IPR003657WRKY domain
PfamPF031065.8E-25257314IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MSHQQALAQV TAQAFHSQYT VDSQADYSLP FSSEATSALT SQFINSSANV TSMKETATPP  60
LRTVHDYLKT YEVSQGFQTS ALTVDKPVDD GYNWRKYGQK AVKGGEYPRS YYKCTQASCP  120
VKKRVEHSAY GQITQIIYRG QHNHQRPPKR RSKDGGNLLN EDDFPENRDA LTRSERGSQD  180
HSGKVEVSND GIAGPSMSKR RDGGDQSSGS SDREEEDNDE AGDDNGDAGI VNANKRQVPA  240
PAQRIIVQTT SEIDLLDDGY RWRKYGQKVV KGNPHPRSYY KCTYQGCDVK KHIERCSQDP  300
TSVITTYEGK HSHDVPVARS SVAAAASANA SSSISLLHRG QKAASSGQRV LPRAALHTSD  360
SSLQLKEENE IT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-3674316577Probable WRKY transcription factor 4
2lex_A1e-3674316577Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_31894.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2500890.0AK250089.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf63p16, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193919.10.0probable WRKY transcription factor 4
RefseqXP_020193920.10.0probable WRKY transcription factor 4
SwissprotQ9XI908e-86WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A287NYR20.0A0A287NYR2_HORVV; Uncharacterized protein
TrEMBLM0VJY50.0M0VJY5_HORVV; Uncharacterized protein
STRINGMLOC_31894.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-79WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]