PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_3291.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 59aa    MW: 6897.89 Da    PI: 8.5129
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_3291.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000153358123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                 y+C+   C++sF  k +L  H r  +
  MLOC_3291.1 33 YTCNieGCSMSFDMKNELSLHERHiC 58
                 99*******************99766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.1E-53355IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 59 aa     Download sequence    Send to blast
SKHITRTKTM KQLKKATGEE RTPRDDQMRV EGYTCNIEGC SMSFDMKNEL SLHERHICP
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_3291.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703062e-49HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164795.17e-26lysine-specific demethylase JMJ705-like
TrEMBLA0A287U9I15e-31A0A287U9I1_HORVV; Uncharacterized protein
STRINGMLOC_3291.12e-37(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.14e-08relative of early flowering 6