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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | MLOC_33258.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 120aa MW: 14110.3 Da PI: 10.1132 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 41 | 6.3e-13 | 4 | 61 | 32 | 91 |
FAR1 32 tfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
+ Cs+eg+++ k e+++r ++++r++Cka +k+kk+ ++w +k+ leHnH+l+p
MLOC_33258.1 4 LYACSREGNSTFYKPG-EERKRAKMSKRVNCKAAVKMKKK-GKEWIYEKVLLEHNHTLNP 61
699*******999888.99999*****************9.9***************975 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 6.5E-10 | 4 | 61 | IPR004330 | FAR1 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0008270 | Molecular Function | zinc ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 120 aa Download sequence Send to blast |
MPRLYACSRE GNSTFYKPGE ERKRAKMSKR VNCKAAVKMK KKGKEWIYEK VLLEHNHTLN 60 PDACELKHIR SHKNKDPVIM ELIDDLETCD VSPNATMNVL TRFHGNRDHM SRSERDLQKR |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | MLOC_33258.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020164017.1 | 2e-66 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| Refseq | XP_020164018.1 | 2e-66 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| Refseq | XP_020164019.1 | 2e-66 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | A0A452ZUL0 | 2e-68 | A0A452ZUL0_AEGTS; Uncharacterized protein | ||||
| STRING | Traes_5BL_8BAA498F1.1 | 1e-47 | (Triticum aestivum) | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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