PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_33638.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 343aa    MW: 35111.4 Da    PI: 6.5035
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_33638.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.6e-08237257526
                   --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   +C ++ar G+Ck G+ C+F Hg
  MLOC_33638.1 237 PCLYYAR-GYCKNGSACRFVHG 257
                   8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.812232259IPR000571Zinc finger, CCCH-type
SMARTSM003560.0032234258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5235257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4236257IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5237257IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDAYEATKVV FARIQGLDPD HAAKIMGLLL IQDHGEKEMI RLAFGPEALL LAVMAKARKD  60
LGLLPASSGP GTPTSAAATG HSPFMLSRQN SGRGGGGTAP SPLSVSSPSS WAPPPVFSRS  120
NSVSNGSAAE EMAGVGEELM SPANGPQSPF FGGGGDSLIL DELHLQDQLA FLSEGGMGGG  180
GRQLPLFDNG ECRSPSGGDG GLFPYGAGWA NGGPGHRRSA SVSELCFGGG DGLGWKPCLY  240
YARGYCKNGS ACRFVHGGFP DDLAGAKMDQ AAVEQQCQDF LLRSKSQRLA AAAGFAYSPT  300
GSLPGSPSAA SKCLSLLLQQ QQQQQNDGQR AAAAAAAAAV VLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_33638.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3619770.0AK361977.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001K04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161081.11e-175zinc finger CCCH domain-containing protein 53-like
SwissprotQ0D3J91e-155C3H53_ORYSJ; Zinc finger CCCH domain-containing protein 53
TrEMBLA0A287H7I80.0A0A287H7I8_HORVV; Uncharacterized protein
STRINGMLOC_33638.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14331115
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]