PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_33638.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 199aa    MW: 20595.9 Da    PI: 5.1693
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_33638.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.3e-08106126526
                   --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   +C ++ar G+Ck G+ C+F Hg
  MLOC_33638.4 106 PCLYYAR-GYCKNGSACRFVHG 126
                   8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.812101128IPR000571Zinc finger, CCCH-type
SMARTSM003560.0032103127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5104126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-5105126IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-6106126IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAGVGEELMS PANGPQSPFF GGGGDSLILD ELHLQDQLAF LSEGGMGGGG RQLPLFDNGE  60
CRSPSGGDGG LFPYGAGWAN GGPGHRRSAS VSELCFGGGD GLGWKPCLYY ARGYCKNGSA  120
CRFVHGGFPD DLAGAKMDQA AVEQQCQDFL LRSKSQRLAA AAGFAYSPTG SLPGSPSAAS  180
KCLSLLLQQQ QQQQNDGQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_33638.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3619770.0AK361977.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001K04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161081.11e-108zinc finger CCCH domain-containing protein 53-like
SwissprotQ0D3J91e-92C3H53_ORYSJ; Zinc finger CCCH domain-containing protein 53
TrEMBLA0A287H7I81e-138A0A287H7I8_HORVV; Uncharacterized protein
TrEMBLM0VLC71e-139M0VLC7_HORVV; Uncharacterized protein
STRINGMLOC_33638.11e-140(Hordeum vulgare)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]