PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_34121.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

HD-ZIP

Protein Properties

Length: 67aa MW: 7991.23 Da PI: 10.2247

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_34121.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.8	1e-19	1	48	9	56
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+q +Lee+F+ +++++ ++++ LA++lgL rqV vWFqNrRa+ k MLOC_34121.1 1 KDQAAVLEECFKTHSTLNPKQKTALANRLGLRPRQVEVWFQNRRARTK 48 589*******************************************98 PP
2	HD-ZIP_I/II	105.8	3.3e-34	1	66	8	73
HD-ZIP_I/II 8 keqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydal 73 k+q+++LEe+F+++++L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e++kr++++l MLOC_34121.1 1 KDQAAVLEECFKTHSTLNPKQKTALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYMKRWCEQL 66 69**************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.694	1	50	IPR001356	Homeobox domain
CDD	cd00086	5.88E-11	1	51	No hit	No description
SMART	SM00389	6.7E-8	1	54	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.6E-18	1	48	IPR009057	Homeodomain-like
Pfam	PF00046	5.0E-17	1	48	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.72E-17	2	59	IPR009057	Homeodomain-like
PRINTS	PR00031	4.9E-6	21	30	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	25	48	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.9E-6	30	46	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 67 aa Download sequence Send to blast
KDQAAVLEEC FKTHSTLNPK QKTALANRLG LRPRQVEVWF QNRRARTKLK QTEVDCEYMK 60 RWCEQLA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	50	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_34121.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365238	1e-106	AK365238.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2032H17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020176241.1	5e-43	homeobox-leucine zipper protein HOX2-like
Swissprot	Q5VPE3	3e-40	HOX2_ORYSJ; Homeobox-leucine zipper protein HOX2
Swissprot	Q84U86	3e-40	HOX2_ORYSI; Homeobox-leucine zipper protein HOX2
TrEMBL	A0A446X0G3	4e-42	A0A446X0G3_TRITD; Uncharacterized protein
TrEMBL	A0A453QLF8	2e-42	A0A453QLF8_AEGTS; Uncharacterized protein
STRING	BRADI1G51257.1	2e-41	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-34	homeobox from Arabidopsis thaliana

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]