PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_34121.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 92aa    MW: 10837.3 Da    PI: 8.672
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_34121.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox391.4e-1245732856
                  HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox 28 eereeLAkklgLterqVkvWFqNrRakek 56
                  ++++ LA++lgL  rqV vWFqNrRa+ k
  MLOC_34121.2 45 KQKTALANRLGLRPRQVEVWFQNRRARTK 73
                  68999**********************98 PP
2HD-ZIP_I/II77.62.1e-2544912673
   HD-ZIP_I/II 26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydal 73
                  +++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e++kr++++l
  MLOC_34121.2 44 QKQKTALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYMKRWCEQL 91
                  589*******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000869.11E-84476No hitNo description
SuperFamilySSF466892.31E-104584IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-114579IPR009057Homeodomain-like
PfamPF000466.0E-104573IPR001356Homeobox domain
PROSITE profilePS5007112.1794575IPR001356Homeobox domain
PRINTSPR000316.9E-64655IPR000047Helix-turn-helix motif
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
PRINTSPR000316.9E-65571IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
STLNPVSPFS DDLSTAWLAR GVRPWILCDG SHWADRDFCL DDLQKQKTAL ANRLGLRPRQ  60
VEVWFQNRRA RTKLKQTEVD CEYMKRWCEQ LA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16775RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_34121.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3652387e-72AK365238.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2032H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170044.13e-26homeobox-leucine zipper protein HOX28-like
RefseqXP_020176241.13e-26homeobox-leucine zipper protein HOX2-like
SwissprotQ5VPE32e-24HOX2_ORYSJ; Homeobox-leucine zipper protein HOX2
SwissprotQ84U862e-24HOX2_ORYSI; Homeobox-leucine zipper protein HOX2
TrEMBLA0A446X0E95e-42A0A446X0E9_TRITD; Uncharacterized protein
STRINGMLOC_34121.22e-62(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.17e-23homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]