PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_34311.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 112aa    MW: 11970.7 Da    PI: 8.1077
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_34311.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000137092123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y Cp C ++F +    + H+r+H
  MLOC_34311.1 70 YGCPVCFRMFATVKAVHGHMRSH 92
                  67********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.26E-66895No hitNo description
Gene3DG3DSA:3.30.160.602.0E-46894IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.4947097IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MMTGSSSQVF IMPGAGQVHY LLAGGAGGGE DPRYPCTFKS LHEQDAVVPA IARGSKRPAA  60
VPGGAHVEPY GCPVCFRMFA TVKAVHGHMR SHTDRSWRGM EPPRPEPLGE LE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_34311.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175215.14e-51zinc finger protein ZAT9-like
TrEMBLA0A3B6SQ489e-65A0A3B6SQ48_WHEAT; Uncharacterized protein
TrEMBLA0A446YZG51e-64A0A446YZG5_TRITD; Uncharacterized protein
STRINGMLOC_34311.13e-77(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130102729