PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_34522.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 223aa    MW: 24618 Da    PI: 7.9088
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_34522.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.81.9e-2243104259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                   dDg++WrKYG K+  +s+fpr YYrCt++   +Cp++k+v++++ +dp ++++tY ++H ++
  MLOC_34522.1  43 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKtdlKCPATKQVQQKDmSDPPLFTVTYFNHHSCN 104
                   8***************************9999********976438*************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-2331105IPR003657WRKY domain
SuperFamilySSF1182902.09E-2235105IPR003657WRKY domain
PROSITE profilePS5081116.52437106IPR003657WRKY domain
SMARTSM007744.6E-3342105IPR003657WRKY domain
PfamPF031061.7E-2443103IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MALDSVPSYP SDLGSSSSRT TRTQQRIRKE ERTWTADTYA PYDDGHQWRK YGEKKLSNSN  60
FPRFYYRCTY KTDLKCPATK QVQQKDMSDP PLFTVTYFNH HSCNTTSRPI GSAPDTTEQS  120
SSRRAVSICF GSHATGEQPT FLTSPGTLQS PASTTNQQSD IGAYGHQFQW TDTSPSADDA  180
PVKMETDSLA GTGASSGGAS GHALSRTLLP IGQSRCIEYF HFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-1543103968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_34522.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3656570.0AK365657.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2035P16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172253.11e-158WRKY transcription factor 55-like
TrEMBLF2DP391e-164F2DP39_HORVV; Predicted protein (Fragment)
STRINGMLOC_34522.11e-166(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-19WRKY DNA-binding protein 55