PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_34522.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 199aa    MW: 21636.1 Da    PI: 7.4681
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_34522.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.61.6e-1037802059
                  S-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
          WRKY 20 fprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59
                    r YYrCt++   +Cp++k+v++++ +dp ++++tY ++H ++
  MLOC_34522.2 37 ICRFYYRCTYKtdlKCPATKQVQQKDmSDPPLFTVTYFNHHSCN 80
                  5799******9999********976438*************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007742.5E-83281IPR003657WRKY domain
SuperFamilySSF1182902.62E-103481IPR003657WRKY domain
PfamPF031061.2E-123579IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-103781IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MQLLYVYTSL VPGNVFALEC ISSVSFRGGN LNLRHTICRF YYRCTYKTDL KCPATKQVQQ  60
KDMSDPPLFT VTYFNHHSCN TTSRPIGSAP DTTEQSSSRR AVSICFGSHA TGEQPTFLTS  120
PGTLQSPAST TNQQSDIGAY GHQFQWTDTS PSADDAPVKM ETDSLAGTGA SSGGASGHAL  180
SRTLLPIGQS RCIEYFHFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_34522.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3645540.0AK364554.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2026H13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172253.11e-112WRKY transcription factor 55-like
TrEMBLF2DKY61e-146F2DKY6_HORVV; Predicted protein
STRINGMLOC_34522.11e-116(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-09WRKY DNA-binding protein 46