PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_36345.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 186aa    MW: 21380.3 Da    PI: 9.0231
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_36345.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.11.3e-172368555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  hn  ErrRRd+iN+++  L+ellP++     +K +K+++L +A++Y+ksLq
  MLOC_36345.1 23 HNFSERRRRDKINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 68
                  99************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.0E-201675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.4571867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-212294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-152368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.75E-182372No hitNo description
SMARTSM003531.3E-182473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEDGRALRRM SIPTRRSRSA DFHNFSERRR RDKINEKLKA LQELLPNCTK TDKVSMLDEA  60
IDYLKSLQLQ LQMLVMGKGM APVVPPELQQ YMHYITTDPA AQLMQIPPSE PPRPFQITHA  120
NPPQQESDFL SQMQNHLHPS DQPQINFLRP PKLQLYTPEQ RGGIGSSSGH NGGWIPERSS  180
SYNFME
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631ERRRRD
22732RRRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_36345.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2504580.0AK250458.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf83b20, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171333.11e-133transcription factor PIF1-like isoform X2
TrEMBLM0VQ511e-135M0VQ51_HORVV; Uncharacterized protein
STRINGMLOC_36345.31e-134(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-30phytochrome interacting factor 3