PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_3638.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HB-other
Protein Properties Length: 219aa    MW: 23767.2 Da    PI: 7.7424
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_3638.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox201.2e-062233354
                 HHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox 33 LAkklgLterqVkvWFqNrRak 54
                 LAk++gLt +qV++WF N R +
  MLOC_3638.1  2 LAKQTGLTRNQVSNWFINARVR 23
                 9*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.171127IPR001356Homeobox domain
PfamPF059201.2E-8123IPR008422Homeobox KN domain
Gene3DG3DSA:1.10.10.601.8E-13131IPR009057Homeodomain-like
SuperFamilySSF466895.13E-9135IPR009057Homeodomain-like
CDDcd000861.22E-7228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MLAKQTGLTR NQVSNWFINA RVRLWKPMVE EIHNLEMRQG HKSSGADKNQ LGSAQQQMQQ  60
HSPDSSGRPS DPSNSQQAGQ SSSGMTQNRG GNHQAHRHVQ NELSPMTHDM PGQVSFAYNG  120
GGLAAHHHHH HHSMALSHPH QQVEGGAGSS GGVSLTLGLH QNNRAYIAEP LPAALPLNLA  180
HRFGLEDVSD AYAMAASFGG QDRHFTKEMG GHLLHDFVG
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_3638.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3634970.0AK363497.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2015P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165654.11e-107BEL1-like homeodomain protein 9
TrEMBLA0A287G7731e-158A0A287G773_HORVV; Uncharacterized protein
STRINGMLOC_3638.21e-154(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.11e-17BEL1-like homeodomain 8