PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_3638.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TALE
Protein Properties Length: 580aa    MW: 62688.6 Da    PI: 8.4987
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_3638.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.21.8e-103473841954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  MLOC_3638.2 347 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 384
                  554459******************************88 PP
2BELL91.67.7e-30214283372
         BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  +e q +k++L+sl+eeV+krY+qy++qlq+vi sFe+vagl +a+p++s+Al+++S+hF+ Lk  i +q+
  MLOC_3638.2 214 AEQQWRKTRLISLMEEVCKRYRQYYQQLQAVITSFETVAGLSNAAPFASIALRTMSKHFKYLKSTIQNQL 283
                  58899*************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.9E-34142281IPR006563POX domain
PfamPF075261.2E-37147279IPR006563POX domain
PROSITE profilePS5007112.455325388IPR001356Homeobox domain
CDDcd000865.09E-14328389No hitNo description
SMARTSM003891.4E-11328392IPR001356Homeobox domain
SuperFamilySSF466892.99E-17330395IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-29331392IPR009057Homeodomain-like
PfamPF059205.1E-19345384IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MSSAAGGYGG GADHQHQHQH QHQLLLGQAA AGQLYHVPQH SRRDKLRFPP DPADSSPPTP  60
GAWPPPTVPF YSYASSSSSY SPHSPTLAHA HAHNQLLAHG MPVGAQIPSQ NFALSLSSSS  120
SNPPPQQRRH LAGATGPYGP FTGYAAVLGR SRFLGPAQKL LEEICDVGGR PSQLDRCSDD  180
GLLDLDAMDA AAEGGHEMDS SDRAAAEGGT VSGAEQQWRK TRLISLMEEV CKRYRQYYQQ  240
LQAVITSFET VAGLSNAAPF ASIALRTMSK HFKYLKSTIQ NQLRNTSKAA AGKDSLGKED  300
MAFGLMGGGA ALMRGGNANA FSQPHNIWRP QRGLPERAVS VLRAWLFEHF LHPYPTDSDK  360
QMLAKQTGLT RNQVSNWFIN ARVRLWKPMV EEIHNLEMRQ GHKSSGADKN QLGSAQQQMQ  420
QHSPDSSGRP SDPSNSQQAG QSSSGMTQNR GGNHQAHRHV QNELSPMTHD MPGQVSFAYN  480
GGGLAAHHHH HHHSMALSHP HQQVEGGAGS SGGVSLTLGL HQNNRAYIAE PLPAALPLNL  540
AHRFGLEDVS DAYAMAASFG GQDRHFTKEM GGHLLHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-17334392563Homeobox protein Meis2
3k2a_B8e-17334392563Homeobox protein Meis2
4xrs_A7e-17334391158Homeobox protein Meis1
4xrs_B7e-17334391158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_3638.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3634970.0AK363497.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2015P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165654.10.0BEL1-like homeodomain protein 9
TrEMBLA0A287G7850.0A0A287G785_HORVV; Uncharacterized protein
STRINGMLOC_3638.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.15e-73TALE family protein