PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_36385.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TALE
Protein Properties Length: 477aa    MW: 53150.3 Da    PI: 7.412
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_36385.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.87.5e-082953321954
                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   Fe   ++yp+  ++  LA++ gL+ +qV++WF N R +
  MLOC_36385.1 295 FEHflHPYPNDVDKHILARQSGLSRSQVSNWFINARVR 332
                   5544589*****************************88 PP
2BELL94.31.1e-30150219372
          BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                   ++l+++k++Lls++eeVd+ Y++y+e++++   sF++vag+g+a++Yt+lA++a+SrhFrcL+da+++qi
  MLOC_36385.1 150 MALERRKTRLLSMVEEVDRCYRRYREKMRATEMSFDEVAGMGAAQVYTKLAMRAMSRHFRCLRDALVGQI 219
                   7899****************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.5E-4486217IPR006563POX domain
PfamPF075266.8E-3892215IPR006563POX domain
PROSITE profilePS5007111.272273336IPR001356Homeobox domain
CDDcd000868.89E-11276337No hitNo description
SMARTSM003891.0E-7276340IPR001356Homeobox domain
SuperFamilySSF466891.88E-16277343IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-26279342IPR009057Homeodomain-like
PfamPF059202.4E-16293332IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MMASHEPHHH LLGFSSSSPV TPNPAAMAMA FDHHGLFAPL QEDMPPRSGG DRPWPPHVSM  60
LSLDNTASQH ELQPFTVAPP SMMTMQQQSF WLNSSRYLGP ARELLSEFCN LEGDAMNRGA  120
TMQAPKLDSD KSPACGPWGA NPSVSSMDYM ALERRKTRLL SMVEEVDRCY RRYREKMRAT  180
EMSFDEVAGM GAAQVYTKLA MRAMSRHFRC LRDALVGQIR TLKKSMGESR DADGMLAAPG  240
ASKGDTPRLR VVDQCLRRQR AFQQYGGAAA IESCPWRPQR GLPERAVAVL RSWLFEHFLH  300
PYPNDVDKHI LARQSGLSRS QVSNWFINAR VRLWKPMIEE MYAEETIQHD DNGASDGRAE  360
PSPADHQKNK LAAWTKVATI RDESCHRFSS TNNPSGCFIP SSLVAEGGEL RGYPCLRSDV  420
GNGAVSLTLG LQQQRAFTSP AMIMQQQSSL IIGAEEEDVV LPYRNLMGSE LLHDFAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-14282340563Homeobox protein Meis2
4xrm_B1e-14282340563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_36385.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3607060.0AK360706.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1123N03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149277.10.0homeobox protein BEL1 homolog
RefseqXP_020166134.10.0homeobox protein BEL1 homolog
TrEMBLF2D9Z30.0F2D9Z3_HORVV; Predicted protein
STRINGMLOC_36385.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63983547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-96TALE family protein