PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_36423.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 416aa    MW: 44431.2 Da    PI: 7.0108
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_36423.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.4e-14176222455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h ++Er+RR++iN +f eL +++P +     kK++Ka+iL  Av+Y+k+ q
  MLOC_36423.6 176 DHIMAERKRREKINRRFIELSTVIPGL-----KKMDKATILSDAVKYVKEQQ 222
                   699************************.....9****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.618172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11176222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-17176231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-16176231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-15177226No hitNo description
SMARTSM003533.6E-15178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MYQLEAMDDS SLFMQWAVDT LQHEHPPAPA AAYAGGGTFP SLEELRRSAL QHGTAQDGHR  60
HLAADSWSSG DSAGGGHENT SAAVVENDVW SSNSAKCATA CSVGSSNHLP MSWNFTSALA  120
QPSNEAPAAA APPSGAHDGP GVTVPEQAHV SAPTSRRASA AKGAARAAGH TPYAQDHIMA  180
ERKRREKINR RFIELSTVIP GLKKMDKATI LSDAVKYVKE QQEKLKALED RSLRSVAVES  240
VVLVKKKSRT AAAAPEDDCP SPSAGAVAVS TTTTTTTGGS ALPEIEARIT ESNVMVRIHC  300
EDSKGVLVRL LAEVEGLHLS ITHANAIQFP ACTVIITVMA KANSFLQLHL PSISGTFSFL  360
FLHRIFFPLS PGILWLRPAS ITCIFGQNSL YFTQFYTSIF SLDSTECTGI FSHCVH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180185ERKRRE
2181186RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_36423.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3646670.0AK364667.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2027G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175438.11e-164transcription factor NAI1-like
TrEMBLA0A287MYG90.0A0A287MYG9_HORVV; Uncharacterized protein
STRINGMLOC_36423.50.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-34bHLH family protein